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Comparison · Infra & APIs
campsis vs pr2database
A side-by-side editorial comparison of campsis and pr2database — release velocity, themes, recent moves, and the top alternatives to consider.
campsis vs pr2database: at a glance
What is campsis?
Campsis breaks its API on purpose: snake_case throughout, RxODE compatibility cut loose.
Campsis runs clinical-trial simulations from pharmacometric models, sitting on mrgsolve and rxode2 as interchangeable engines, with the sibling package Campsismod supplying the model object layer. Version 1.9.0 is the release where the suite stops carrying its history: the whole API migrates to snake_case, backward compatibility with the old RxODE package is removed, and result processing is refactored into output functions that can be applied as a collection, with an NCA table the first substantial one. Campsismod made the same snake_case move a week earlier, so this is a suite-wide rename rather than one package's decision.
What is pr2database?
The protist reference database keeps widening past the rRNA gene it was built on.
PR2 curates ribosomal reference sequences for eukaryotes, distributed as flat files and through a web interface, with each release crediting the specialists who curated individual clades. Since 2022 the structural changes have outweighed the curation: one combined SSU database replaced the separate ones, the taxonomy moved from eight levels to nine, and companion databases for ribosomal operons, mixoplankton and mitochondrial COI have been linked in.
campsis vs pr2database: editorial side-by-side
campsis
3.8INFRA · APIS
Campsis breaks its API on purpose: snake_case throughout, RxODE compatibility cut loose.
◆ Current state
Campsis runs clinical-trial simulations from pharmacometric models, sitting on mrgsolve and rxode2 as interchangeable engines, with the sibling package Campsismod supplying the model object layer. Version 1.9.0 is the release where the suite stops carrying its history: the whole API migrates to snake_case, backward compatibility with the old RxODE package is removed, and result processing is refactored into output functions that can be applied as a collection, with an NCA table the first substantial one. Campsismod made the same snake_case move a week earlier, so this is a suite-wide rename rather than one package's decision.
◆ Where it's heading
The 1.8 and 1.9 releases together describe a package being made drivable from outside R. JSON interfaces arrived first for models in Campsismod 1.3.0 and for datasets in Campsis 1.8.0, then extended to scenarios, settings and study replication; the output side has now been generalised the same way, from fixed result processing to a collection of output functions applied to simulated results. Renaming every function and cutting RxODE loose is the cost of that consolidation, paid in one deliberate breaking release rather than spread across several.
◆ Prediction
With the rename and the RxODE removal behind it, the next releases should restore the rxode2 engine to the test suite, which 1.9.0 removed temporarily, and continue filling out the output-function catalogue beyond NCA. The JSON surface looks like the intended entry point for driving Campsis from outside R, though the entries do not say what is meant to consume it.
pr2database
0.0INFRA · APIS
The protist reference database keeps widening past the rRNA gene it was built on.
◆ Current state
PR2 curates ribosomal reference sequences for eukaryotes, distributed as flat files and through a web interface, with each release crediting the specialists who curated individual clades. Since 2022 the structural changes have outweighed the curation: one combined SSU database replaced the separate ones, the taxonomy moved from eight levels to nine, and companion databases for ribosomal operons, mixoplankton and mitochondrial COI have been linked in.
◆ Where it's heading
The database is becoming a hub rather than a single file. Each recent release integrates something maintained elsewhere, with the ROD, EukRibo, Mixoplankton and now eKOI databases reachable through the same interface, while the SSU flat files themselves change little between versions. Curation continues underneath, clade by clade, at a pace set by which specialist contributed that cycle.
◆ Prediction
Expect the next release to integrate or refresh another linked database while the SSU files see routine curation, following the pattern of the last three.
Alternatives to campsis and pr2database
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either campsis or pr2database.
prioritizr
Conservation planning absorbs the literature's target-setting rules as code.
jSDM
Joint species distribution models in Gibbs-sampled C++, quiet since 2023.
rsofun
An ecosystem model starts tracking carbon isotopes and land-use change.
usmap
Ten years in, US mapping splits its data out and finally adds Puerto Rico.
trackeR
Fitness-tracking analysis in slow maintenance, still absorbing upstream breakage.
See all campsis alternatives → · See all pr2database alternatives →
Recent activity from campsis and pr2database
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 15d agocampsissnake_case across the API; RxODE compatibility removed ⚡
- 5mo agocampsisJSON arguments reach Dataset, Scenarios and Settings
- 7mo agocampsisMaintenance release for future package warnings
- 7mo agocampsisJSON import for Campsis datasets
- 9mo agopr2databaseeKOI mitochondrial COI database reachable from the interface
- 1y agopr2databaseRibosomal Operon Database 1.2 integrated; ten clades curated
- 1y agocampsisDosing gains vectorized compartments and cycle repetition
- 1y agocampsisParameter uncertainty from SIR and bootstrap output
- 2y agopr2databaseTaxonomy restructured from eight levels to nine ⚡
- 3y agopr2databaseNew web interface at app.pr2-database.org
- 4y agopr2databaseOne SSU database for nuclear, organelle and bacterial sequences ⚡
- 5y agopr2database2,966 sequences added and 3,817 removed across four clades
Frequently asked questions
What is the difference between campsis and pr2database?
They serve adjacent needs but don't currently overlap on shipped themes. campsis is currently shipping more aggressively (velocity 3.8 vs 0.0), with 1 editorial sparks in the last 30 days against 0. See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is campsis better than pr2database?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. campsis is currently shipping more aggressively (velocity 3.8 vs 0.0), with 1 editorial sparks in the last 30 days against 0. For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to campsis?
Top campsis alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "campsis alternatives" section above for the current picks, or visit /alternatives/campsis for the full list with editorial commentary on each.
What are the best alternatives to pr2database?
Top pr2database alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "pr2database alternatives" section above for the current picks, or visit /alternatives/pr2database for the full list with editorial commentary on each.