vcfR
A genomics workhorse whose visible release feed stops dead in mid-2020.
Comparison · Infra & APIs
ggh4x vs jSDM
A side-by-side editorial comparison of ggh4x and jSDM — release velocity, themes, recent moves, and the top alternatives to consider.
ggh4x vs jSDM: at a glance
What is ggh4x?
Handed its axis and legend guides to ggplot2 and legendry, and kept the facets
ggh4x is a set of ggplot2 extensions — nested and manual facets, per-facet scales, forced panel sizes, and statistics such as stat_difference() and stat_rle(). Its guide functions, once a substantial part of the package, are deprecated: 0.3.0 redirected users to ggplot2's own guide arguments and to the legendry package, and 0.3.1 made the deprecated functions return plain equivalents. What remains as this package's own territory is facetting and panel layout.
What is jSDM?
Joint species distribution models in Gibbs-sampled C++, quiet since 2023.
jSDM fits joint species distribution models by Gibbs sampling, with the sampler written in C++ against GSL and Armadillo and exposed through binomial probit, binomial logit, Poisson log and Gaussian entry points. The 0.2 line extended it with species traits, constrained factor loadings and residual-association plots. The one entry since 2023 carries only a compare link.
ggh4x vs jSDM: editorial side-by-side
ggh4x
0.0INFRA · APIS
Handed its axis and legend guides to ggplot2 and legendry, and kept the facets
◆ Current state
ggh4x is a set of ggplot2 extensions — nested and manual facets, per-facet scales, forced panel sizes, and statistics such as stat_difference() and stat_rle(). Its guide functions, once a substantial part of the package, are deprecated: 0.3.0 redirected users to ggplot2's own guide arguments and to the legendry package, and 0.3.1 made the deprecated functions return plain equivalents. What remains as this package's own territory is facetting and panel layout.
◆ Where it's heading
The handover was signalled well in advance. Version 0.2.5 set the guides' lifecycle to 'questioning' and said outright they might migrate to a new package once ggplot2 overhauled its guide system, and 0.3.0 executed that eighteen months later. Much of the rest of the changelog is anticipatory compatibility work for upcoming ggplot2 releases, the standing cost of being an extension package. Releases carry playful codenames that say nothing about their contents.
◆ Prediction
The deprecated guide functions are scheduled for removal in the next non-hotfix release, so expect that next; continued work should concentrate on facets and panel sizing, the areas neither ggplot2 nor legendry has absorbed.
jSDM
0.0INFRA · APIS
Joint species distribution models in Gibbs-sampled C++, quiet since 2023.
◆ Current state
jSDM fits joint species distribution models by Gibbs sampling, with the sampler written in C++ against GSL and Armadillo and exposed through binomial probit, binomial logit, Poisson log and Gaussian entry points. The 0.2 line extended it with species traits, constrained factor loadings and residual-association plots. The one entry since 2023 carries only a compare link.
◆ Where it's heading
The package built out its model family quickly and then stopped: five of the six visible entries are stamped the same day as a backfilled archive, and the only later release says nothing about its contents. The direction the 0.2 line was heading, toward trait-mediated species effects and better convergence on latent variable models, has no visible continuation.
◆ Prediction
The feed does not support a confident prediction; the latest entry publishes no notes, so whether the package is still developing or only being kept CRAN-clean cannot be read from it.
Alternatives to ggh4x and jSDM
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either ggh4x or jSDM.
dialr
The R phone-number package stopped only parsing numbers and started asking them where they are.
ggVennDiagram
A Venn diagram package whose public release notes say almost nothing — including about its copyright cleanup.
ordinalsimr
A Shiny app for choosing the right ordinal test reached CRAN in a single 90-minute burst of tags.
transltr
A new R localization package that reached CRAN and immediately downgraded itself to experimental.
hereR
An R client for HERE's location APIs, shaped almost entirely by what the vendor exposes next.
Recent activity from ggh4x and jSDM
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 9mo agojSDMjSDM CRAN release v0.2.7: Joint Species Distribution Models
- 1y agoggh4xDeprecated guides now return plain ggplot2 equivalents
- 1y agoggh4xGuide functions deprecated in favour of ggplot2 and legendry ⚡
- 2y agoggh4xCRAN note fix and two facet bug fixes
- 2y agoggh4xAnticipatory changes for ggplot2 3.5.0
- 3y agojSDMSpecies traits, constrained loadings and association plots
- 3y agojSDMFirst release: C++ Gibbs sampler for joint species models ⚡
- 3y agojSDMResidual correlation functions can filter to significant values
- 3y agojSDMjSDM_gaussian() fits continuous data with overdispersion
- 3y agojSDMFour versions of CRAN check corrections
- 3y agoggh4xGuides marked 'questioning'; render_empty and panel-area sizing
- 3y agoggh4xSemi-discrete manual scales and facet whitespace handling
Frequently asked questions
What is the difference between ggh4x and jSDM?
They serve adjacent needs but don't currently overlap on shipped themes. ggh4x and jSDM are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is ggh4x better than jSDM?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. ggh4x and jSDM are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to ggh4x?
Top ggh4x alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "ggh4x alternatives" section above for the current picks, or visit /alternatives/ggh4x for the full list with editorial commentary on each.
What are the best alternatives to jSDM?
Top jSDM alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "jSDM alternatives" section above for the current picks, or visit /alternatives/jsdm for the full list with editorial commentary on each.