Omni
Omni ships weekly, and almost every week the headline item is an AI feature.
Comparison · Analytics
glyvis vs silx
A side-by-side editorial comparison of glyvis and silx — release velocity, themes, recent moves, and the top alternatives to consider.
glyvis vs silx: at a glance
What is glyvis?
glyvis keeps losing plot functions as the packages behind them get reorganized.
glyvis is the plotting layer for glycoverse results. Its recent releases are dominated by two forces it does not control: glyexp's container migration, which it absorbed in 0.7.0 by accepting SummarizedExperiment inputs, and glystats' function removals, which cost it first the WGCNA and consensus-clustering autoplot methods and then the entire enrichment plotting surface. Its own additions in the window are narrow, mostly label handling and NA robustness.
What is silx?
silx settles into maintenance a release after its PySide6 migration
silx is in the quiet phase after a generational release. 3.1.1 is a single fix to FitWidget loading a fit function from file. The release before it, 3.1.0, was the first real feature work since the migration - asinh axis scaling, twilight colormaps, and dark-theme icons - and 3.0.1 was similarly small. The 3.0.0 cut that reset the Qt binding and Python floor still defines what the line is doing.
glyvis vs silx: editorial side-by-side
glyvis
0.0ANALYTICS
glyvis keeps losing plot functions as the packages behind them get reorganized.
◆ Current state
glyvis is the plotting layer for glycoverse results. Its recent releases are dominated by two forces it does not control: glyexp's container migration, which it absorbed in 0.7.0 by accepting SummarizedExperiment inputs, and glystats' function removals, which cost it first the WGCNA and consensus-clustering autoplot methods and then the entire enrichment plotting surface. Its own additions in the window are narrow, mostly label handling and NA robustness.
◆ Where it's heading
The package is being pruned from upstream rather than expanded from within. Every breaking change in the last four releases is a removal triggered by a sibling package dropping the function that produced the object being plotted. With enrichment now living in glyfun, the plotting for it has to be rebuilt somewhere, and glyvis is the obvious home.
◆ Prediction
Expect enrichment plotting to return once glyfun's result objects stabilize, since the visualizations were removed for want of an upstream producer rather than because users stopped needing them.
silx
5.0ANALYTICS
silx settles into maintenance a release after its PySide6 migration
◆ Current state
silx is in the quiet phase after a generational release. 3.1.1 is a single fix to FitWidget loading a fit function from file. The release before it, 3.1.0, was the first real feature work since the migration - asinh axis scaling, twilight colormaps, and dark-theme icons - and 3.0.1 was similarly small. The 3.0.0 cut that reset the Qt binding and Python floor still defines what the line is doing.
◆ Where it's heading
The cadence has slowed markedly since April, and the content has shifted from structural change to plotting and colormap refinement. That is the expected shape after a binding migration: downstream beamline code needs a stable target, so the project trades feature velocity for a quiet surface. The gap between 3.0.1 in May and 3.1.0 in August is the clearest signal of the deliberate slowdown.
◆ Prediction
Expect further point releases servicing the plotting and fitting widgets rather than another structural change, with feature work continuing to arrive in the 3.1.x minors rather than patches.
Alternatives to glyvis and silx
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either glyvis or silx.
Plotly
Plotly is turning its cloud into a metered compute platform with an enterprise on-ramp.
aniread
aniread stops asking you to know which tracker wrote the file
Rho
Rho's release machinery finally produced a stable build — and it shipped no new product.
Usermaven
Usermaven closed the loop: data comes in from anywhere, and now it goes back out.
OpenCTI
OpenCTI spends a release unblocking queues and hardening upserts
Recent activity from glyvis and silx
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 4h agosilxFitWidget fix for loading a fit function from file
- 9d agosilx3.1.0: asinh axis scaling, twilight colormaps, dark-theme icons
- 1mo agoglyvisDocs recommend the new SE containers
- 1mo agoglyvisplot_logo() detects glycoproteomics across both containers
- 1mo agoglyvisPlots accept SummarizedExperiment; enrichment plots removed
- 3mo agosilx3.0.1: silx view fails to disable HDF5 file locking
- 3mo agoglyvisStale WGCNA and clustering autoplot methods removed
- 3mo agosilx3.0.0: PySide6 becomes the default Qt binding, Python 3.10 required ⚡
- 3mo agosilx3.0.0rc1: release candidate for the PySide6 migration
- 6mo agoglyvisDependencies move to the r-universe repository
- 7mo agoglyvisplot_logo() fetches UniProt sequences automatically
- 1y agosilx2.2.2: plot axes limits, OpenGL axes and libhdf5 1.14 fixes
Frequently asked questions
What is the difference between glyvis and silx?
They serve adjacent needs but don't currently overlap on shipped themes. silx is currently shipping more aggressively (velocity 5.0 vs 0.0), with 0 editorial sparks in the last 30 days against 0. See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is glyvis better than silx?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. silx is currently shipping more aggressively (velocity 5.0 vs 0.0), with 0 editorial sparks in the last 30 days against 0. For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to glyvis?
Top glyvis alternatives in Analytics are ranked by recent ship velocity. Browse the "glyvis alternatives" section above for the current picks, or visit /alternatives/glyvis for the full list with editorial commentary on each.
What are the best alternatives to silx?
Top silx alternatives in Analytics are ranked by recent ship velocity. Browse the "silx alternatives" section above for the current picks, or visit /alternatives/silx for the full list with editorial commentary on each.