pr2database
The protist reference database keeps widening past the rRNA gene it was built on.
Comparison · Infra & APIs
goat vs mmpca
A side-by-side editorial comparison of goat and mmpca — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:cran
goat vs mmpca: at a glance
What is goat?
A gene-set enrichment package that outgrew its human-only origins, then went quiet.
GOAT is a CRAN-published R package for gene set enrichment testing, now at 1.1.4. The visible arc runs from a 2024 beta through a first public CRAN release to a 1.1 line that broadened the package past human gene sets and added persistence for completed analyses. Recent releases are small: the newest ships an igraph handle on plot_network() plus bug fixes.
What is mmpca?
Back from CRAN removal under a new maintainer, with the compiled layer rebuilt.
mmpca implements multiple matrix principal component analysis with a compiled GSL backend. The package spent time off CRAN, and its recent history is a rescue operation rather than a feature program: a new maintainer took it over, moved the native build path onto RcppGSL, and folded the hand-written C bindings into Rcpp. The two most recent entries landed the same day, one restoring the package and one clearing residual CRAN comments.
goat vs mmpca: editorial side-by-side
goat
0.0INFRA · APIS
A gene-set enrichment package that outgrew its human-only origins, then went quiet.
◆ Current state
GOAT is a CRAN-published R package for gene set enrichment testing, now at 1.1.4. The visible arc runs from a 2024 beta through a first public CRAN release to a 1.1 line that broadened the package past human gene sets and added persistence for completed analyses. Recent releases are small: the newest ships an igraph handle on plot_network() plus bug fixes.
◆ Where it's heading
The substantive expansion happened in the 1.1 cycle; everything since has been maintenance and plotting ergonomics. Each release since 1.1 touches one function and returns something callers previously had to reconstruct, which reads as a package settling into a stable API and responding to individual user requests rather than pursuing new scope. The 13-month gap between 1.1.2 and 1.1.4 puts it firmly in low-cadence maintenance.
◆ Prediction
Expect continued point releases that expose internals from the plotting functions or refresh the bundled GO release, not new analysis capability. The entries give no signal of a planned 1.2.
mmpca
0.0INFRA · APIS
Back from CRAN removal under a new maintainer, with the compiled layer rebuilt.
◆ Current state
mmpca implements multiple matrix principal component analysis with a compiled GSL backend. The package spent time off CRAN, and its recent history is a rescue operation rather than a feature program: a new maintainer took it over, moved the native build path onto RcppGSL, and folded the hand-written C bindings into Rcpp. The two most recent entries landed the same day, one restoring the package and one clearing residual CRAN comments.
◆ Where it's heading
Work is concentrated on making the package installable and check-clean rather than on the decomposition itself. The version stamps run out of order, with 2.0.3 predating both 2.0.2 and 2.0.4 by three years, so the feed reads as an archive flush around the CRAN return. Nothing in the entries points at method-level work.
◆ Prediction
Expect maintenance releases that keep the compiled code passing CRAN checks; the entries give no signal about new decomposition features.
Alternatives to goat and mmpca
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either goat or mmpca.
ggalign
Composable aligned layouts, rebuilt on S7 while ggplot2 4.0 lands underneath.
prioritizr
Conservation planning absorbs the literature's target-setting rules as code.
jSDM
Joint species distribution models in Gibbs-sampled C++, quiet since 2023.
rsofun
An ecosystem model starts tracking carbon isotopes and land-use change.
usmap
Ten years in, US mapping splits its data out and finally adds Puerto Rico.
Recent activity from goat and mmpca
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 6mo agogoatplot_network() now hands back the igraph object
- 8mo agommpcaMinor CRAN comments cleared to keep the package listed
- 8mo agommpcaBack on CRAN under a new maintainer, rebuilt on RcppGSL ⚡
- 1y agogoatFix for a reduce_genesets() infinite loop
- 1y agogoatGene sets beyond human, and analyses you can reload ⚡
- 2y agogoatFirst public release, now on CRAN ⚡
- 2y agogoatplot_lollipop() gains barplots and an effect-size axis
- 2y agogoatBeta 0.9.5 tagged, with no changes described
- 3y agommpcaValgrind memory fixes and a maximum-iteration option
Frequently asked questions
What is the difference between goat and mmpca?
Both compete on the same themes — cran — within Infra & APIs. goat and mmpca are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is goat better than mmpca?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. goat and mmpca are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to goat?
Top goat alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "goat alternatives" section above for the current picks, or visit /alternatives/goat for the full list with editorial commentary on each.
What are the best alternatives to mmpca?
Top mmpca alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "mmpca alternatives" section above for the current picks, or visit /alternatives/mmpca for the full list with editorial commentary on each.