pr2database
The protist reference database keeps widening past the rRNA gene it was built on.
Comparison · Infra & APIs
jSDM vs remap
A side-by-side editorial comparison of jSDM and remap — release velocity, themes, recent moves, and the top alternatives to consider.
jSDM vs remap: at a glance
What is jSDM?
Joint species distribution models in Gibbs-sampled C++, quiet since 2023.
jSDM fits joint species distribution models by Gibbs sampling, with the sampler written in C++ against GSL and Armadillo and exposed through binomial probit, binomial logit, Poisson log and Gaussian entry points. The 0.2 line extended it with species traits, constrained factor loadings and residual-association plots. The one entry since 2023 carries only a compare link.
What is remap?
A regional-model smoother in long-term maintenance, four years past its last real feature.
remap fits separate models to geographic regions and blends their predictions into a continuous surface, using the min_n nearest observations so region boundaries do not show as discontinuities. The methodological work is finished — the last behavioural change landed in 2022, and everything since has been unit handling, compiler warnings, dependency compatibility and citation updates. The July release is one such patch.
jSDM vs remap: editorial side-by-side
jSDM
0.0INFRA · APIS
Joint species distribution models in Gibbs-sampled C++, quiet since 2023.
◆ Current state
jSDM fits joint species distribution models by Gibbs sampling, with the sampler written in C++ against GSL and Armadillo and exposed through binomial probit, binomial logit, Poisson log and Gaussian entry points. The 0.2 line extended it with species traits, constrained factor loadings and residual-association plots. The one entry since 2023 carries only a compare link.
◆ Where it's heading
The package built out its model family quickly and then stopped: five of the six visible entries are stamped the same day as a backfilled archive, and the only later release says nothing about its contents. The direction the 0.2 line was heading, toward trait-mediated species effects and better convergence on latent variable models, has no visible continuation.
◆ Prediction
The feed does not support a confident prediction; the latest entry publishes no notes, so whether the package is still developing or only being kept CRAN-clean cannot be read from it.
remap
0.0INFRA · APIS
A regional-model smoother in long-term maintenance, four years past its last real feature.
◆ Current state
remap fits separate models to geographic regions and blends their predictions into a continuous surface, using the min_n nearest observations so region boundaries do not show as discontinuities. The methodological work is finished — the last behavioural change landed in 2022, and everything since has been unit handling, compiler warnings, dependency compatibility and citation updates. The July release is one such patch.
◆ Where it's heading
This is a stable academic package tracking its ecosystem rather than growing. The visible pattern is reactive maintenance: sf's 1.0.0 transition, ggplot2's size-to-linewidth rename, a gcc-UBSAN error on zero-point distance calculations, and now a check that distance matrices passed to remap() and predict() are converted to kilometres. Note that the feed's timestamps invert the version order — 0.3.1 is stamped seconds after 0.3.2 despite being the earlier release, so recency in this feed is not a reliable guide to sequence.
◆ Prediction
Nothing in these entries points to new capability. The realistic expectation is more of the same: a patch whenever sf, ggplot2 or a CRAN check surfaces an incompatibility, at roughly the observed cadence of one release every year or two.
Alternatives to jSDM and remap
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either jSDM or remap.
ggalign
Composable aligned layouts, rebuilt on S7 while ggplot2 4.0 lands underneath.
prioritizr
Conservation planning absorbs the literature's target-setting rules as code.
rsofun
An ecosystem model starts tracking carbon isotopes and land-use change.
usmap
Ten years in, US mapping splits its data out and finally adds Puerto Rico.
trackeR
Fitness-tracking analysis in slow maintenance, still absorbing upstream breakage.
Recent activity from jSDM and remap
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agoremapDistance matrices now converted to kilometres automatically
- 9mo agojSDMjSDM CRAN release v0.2.7: Joint Species Distribution Models
- 1y agoremapCitation updated to the R Journal article
- 1y agoremapUBSAN fix, parallel patch and sf search-path independence
- 3y agojSDMSpecies traits, constrained loadings and association plots
- 3y agojSDMFirst release: C++ Gibbs sampler for joint species models ⚡
- 3y agojSDMResidual correlation functions can filter to significant values
- 3y agojSDMjSDM_gaussian() fits continuous data with overdispersion
- 3y agojSDMFour versions of CRAN check corrections
- 3y agoremappredict() can return an upper bound on combined standard errors
- 5y agoremapRegions without observations no longer break the prediction surface
Frequently asked questions
What is the difference between jSDM and remap?
They serve adjacent needs but don't currently overlap on shipped themes. jSDM and remap are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is jSDM better than remap?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. jSDM and remap are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to jSDM?
Top jSDM alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "jSDM alternatives" section above for the current picks, or visit /alternatives/jsdm for the full list with editorial commentary on each.
What are the best alternatives to remap?
Top remap alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "remap alternatives" section above for the current picks, or visit /alternatives/remap for the full list with editorial commentary on each.