pr2database
The protist reference database keeps widening past the rRNA gene it was built on.
Comparison · Infra & APIs
mmpca vs selection.index
A side-by-side editorial comparison of mmpca and selection.index — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:rcpp
mmpca vs selection.index: at a glance
What is mmpca?
Back from CRAN removal under a new maintainer, with the compiled layer rebuilt.
mmpca implements multiple matrix principal component analysis with a compiled GSL backend. The package spent time off CRAN, and its recent history is a rescue operation rather than a feature program: a new maintainer took it over, moved the native build path onto RcppGSL, and folded the hand-written C bindings into Rcpp. The two most recent entries landed the same day, one restoring the package and one clearing residual CRAN comments.
What is selection.index?
A dormant plant-breeding package returns as a genomic selection index suite
selection.index computes selection indices for plant breeding — weighting several traits into one number breeders can rank on. After two years of silence it shipped 2.0.0 in March 2026, and the package is barely recognisable: snake_case throughout, an Rcpp and RcppEigen computational core, and index families for genomic data, marker data, multi-stage trials and constrained genetic gain sitting beside the original phenotypic ones.
mmpca vs selection.index: editorial side-by-side
mmpca
0.0INFRA · APIS
Back from CRAN removal under a new maintainer, with the compiled layer rebuilt.
◆ Current state
mmpca implements multiple matrix principal component analysis with a compiled GSL backend. The package spent time off CRAN, and its recent history is a rescue operation rather than a feature program: a new maintainer took it over, moved the native build path onto RcppGSL, and folded the hand-written C bindings into Rcpp. The two most recent entries landed the same day, one restoring the package and one clearing residual CRAN comments.
◆ Where it's heading
Work is concentrated on making the package installable and check-clean rather than on the decomposition itself. The version stamps run out of order, with 2.0.3 predating both 2.0.2 and 2.0.4 by three years, so the feed reads as an archive flush around the CRAN return. Nothing in the entries points at method-level work.
◆ Prediction
Expect maintenance releases that keep the compiled code passing CRAN checks; the entries give no signal about new decomposition features.
selection.index
0.0INFRA · APIS
A dormant plant-breeding package returns as a genomic selection index suite
◆ Current state
selection.index computes selection indices for plant breeding — weighting several traits into one number breeders can rank on. After two years of silence it shipped 2.0.0 in March 2026, and the package is barely recognisable: snake_case throughout, an Rcpp and RcppEigen computational core, and index families for genomic data, marker data, multi-stage trials and constrained genetic gain sitting beside the original phenotypic ones.
◆ Where it's heading
The first version series added one function at a time — combinatorial indices, then genetic advance, then mean performance under randomised block designs — against a fixed phenotypic framing. Version 2.0.0 abandons that framing rather than extending it. Genomic and marker information become inputs the package understands, multi-cycle simulation becomes a built-in toolset, and the old combinatorial entry points are replaced by a named lpsi(). The 2.0.1 follow-up is entirely CI and numerical-stability work, which reads like a maintainer bracing a much larger surface.
◆ Prediction
A seventeen-runner CI matrix mirroring every CRAN check flavour, added days after 2.0.0, says the immediate concern is keeping a compiled multi-family package green rather than adding to it. Expect stabilisation releases before anything new.
Alternatives to mmpca and selection.index
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either mmpca or selection.index.
ggalign
Composable aligned layouts, rebuilt on S7 while ggplot2 4.0 lands underneath.
prioritizr
Conservation planning absorbs the literature's target-setting rules as code.
jSDM
Joint species distribution models in Gibbs-sampled C++, quiet since 2023.
rsofun
An ecosystem model starts tracking carbon isotopes and land-use change.
usmap
Ten years in, US mapping splits its data out and finally adds Puerto Rico.
See all mmpca alternatives → · See all selection.index alternatives →
Recent activity from mmpca and selection.index
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 5mo agoselection.indexCI expanded to 17 runners after the 2.0.0 rewrite
- 5mo agoselection.indexGenomic, marker and multi-stage selection indices on an Rcpp core ⚡
- 6mo agoselection.indexUnspecified general performance improvements
- 8mo agommpcaMinor CRAN comments cleared to keep the package listed
- 8mo agommpcaBack on CRAN under a new maintainer, rebuilt on RcppGSL ⚡
- 2y agoselection.indexMean performance for randomised block designs
- 3y agoselection.indexsel.index() and sel.score.rank() removed for comb.indices()
- 3y agommpcaValgrind memory fixes and a maximum-iteration option
- 4y agoselection.indexGenetic advance calculation added
Frequently asked questions
What is the difference between mmpca and selection.index?
Both compete on the same themes — rcpp — within Infra & APIs. mmpca and selection.index are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is mmpca better than selection.index?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. mmpca and selection.index are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to mmpca?
Top mmpca alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "mmpca alternatives" section above for the current picks, or visit /alternatives/mmpca for the full list with editorial commentary on each.
What are the best alternatives to selection.index?
Top selection.index alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "selection.index alternatives" section above for the current picks, or visit /alternatives/selection-index for the full list with editorial commentary on each.