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Comparison · Infra & APIs
packageRank vs PEIMAN2
A side-by-side editorial comparison of packageRank and PEIMAN2 — release velocity, themes, recent moves, and the top alternatives to consider.
packageRank vs PEIMAN2: at a glance
What is packageRank?
CRAN download analytics maintained one micro-change at a time, hundreds per year
packageRank computes download counts and percentile ranks from CRAN's logs, with a filtering layer that tries to separate real installs from mirrors, sequences and bots. The recent releases are dense lists of small changes — thirty or more per version — spread across plot arguments, filter behaviour, and the cranDistribution object that now absorbs what packageDistribution() used to do separately.
What is PEIMAN2?
PEIMAN2 cut its annotation database loose from its release cycle without breaking CRAN.
PEIMAN2 does enrichment analysis over post-translational modifications, testing whether a protein list is enriched for particular PTMs against UniProt-derived annotations, with translation functions bridging to mass spectrometry workflows. Its answers are only as current as its bundled database, and until June that database could only be refreshed by releasing a new package version. Version 1.1.0 changes that.
packageRank vs PEIMAN2: editorial side-by-side
packageRank
0.0INFRA · APIS
CRAN download analytics maintained one micro-change at a time, hundreds per year
◆ Current state
packageRank computes download counts and percentile ranks from CRAN's logs, with a filtering layer that tries to separate real installs from mirrors, sequences and bots. The recent releases are dense lists of small changes — thirty or more per version — spread across plot arguments, filter behaviour, and the cranDistribution object that now absorbs what packageDistribution() used to do separately.
◆ Where it's heading
There is no directional arc here; there is a maintainer keeping a measurement instrument calibrated against a data source that keeps moving. CRAN's logs went missing for a week in 2025 and the package now ships those dates as data and draws them as polygons on every plot. A chatgpt argument has been threaded through the plotting functions since 0.9.6. Function surface churns constantly — arguments renamed, plot helpers archived, others integrated.
◆ Prediction
Given the cadence, the next release will be another few dozen adjustments concentrated wherever CRAN's logs last surprised the maintainer. The consolidation of plotting arguments toward a single axis.package annotation looks unfinished.
PEIMAN2
0.0INFRA · APIS
PEIMAN2 cut its annotation database loose from its release cycle without breaking CRAN.
◆ Current state
PEIMAN2 does enrichment analysis over post-translational modifications, testing whether a protein list is enriched for particular PTMs against UniProt-derived annotations, with translation functions bridging to mass spectrometry workflows. Its answers are only as current as its bundled database, and until June that database could only be refreshed by releasing a new package version. Version 1.1.0 changes that.
◆ Where it's heading
The package has been moving from a fixed snapshot toward versioned, user-selectable data. Earlier releases updated the bundled database in place — 1.0.0 shipped the March 2025 version and said little else — which meant the annotation vintage was whatever the package version implied. Now update_peiman_database() downloads and caches external database files and UniProt PTM lists, enrichment workflows take a database_version argument, and the mass-spec translators take a ptmlist_version, so an analysis can pin a dated database rather than a package release. The CRAN-safe default is preserved deliberately: loading, examples and checks still use the bundled internal data and need no network.
◆ Prediction
Version pinning is now expressible but the release notes do not describe how a chosen version is recorded in output, so surfacing the active database version in results is the natural companion. The database and the UniProt PTM list are versioned separately, which leaves room for a combined manifest.
Alternatives to packageRank and PEIMAN2
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either packageRank or PEIMAN2.
PINstimation
A market-microstructure toolkit that keeps adding estimators as the papers land.
nzilbb.vowels
A vowel-analysis package trimming dependencies after an email address got it archived.
emuR
The R half of the EMU speech database system, fixing what was quietly broken.
BAS
A Bayesian model-averaging package spending its 2.0 on memory, not methods.
tidyplots
tidyplots keeps rebuilding its own foundations rather than layering around them.
See all packageRank alternatives → · See all PEIMAN2 alternatives →
Recent activity from packageRank and PEIMAN2
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 2mo agoPEIMAN2Database updates decouple from package releases ⚡
- 5mo agopackageRankPackage and version axis annotations across every plot
- 10mo agopackageRankMissing CRAN log dates shipped as data and drawn on plots
- 1y agoPEIMAN2Bundled database refreshed to the March 2025 UniProt vintage
- 1y agoPEIMAN2Documentation fix for the second example dataset
- 1y agopackageRankWeekend and version overlays for the base graphics path
- 1y agopackageRankPackage history prefers CRAN over the pkgsearch fallback
- 1y agopackageRankDistribution summaries gain totals and a top-N default
- 1y agopackageRankcranDistribution() object and a direct query family
- 2y agoPEIMAN2Background lists for SEA and PSEA; tidyverse dependency dropped
Frequently asked questions
What is the difference between packageRank and PEIMAN2?
They serve adjacent needs but don't currently overlap on shipped themes. packageRank and PEIMAN2 are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is packageRank better than PEIMAN2?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. packageRank and PEIMAN2 are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to packageRank?
Top packageRank alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "packageRank alternatives" section above for the current picks, or visit /alternatives/packagerank for the full list with editorial commentary on each.
What are the best alternatives to PEIMAN2?
Top PEIMAN2 alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "PEIMAN2 alternatives" section above for the current picks, or visit /alternatives/peiman2 for the full list with editorial commentary on each.