pr2database
The protist reference database keeps widening past the rRNA gene it was built on.
Comparison · Infra & APIs
rsofun vs smam
A side-by-side editorial comparison of rsofun and smam — release velocity, themes, recent moves, and the top alternatives to consider.
rsofun vs smam: at a glance
What is rsofun?
An ecosystem model starts tracking carbon isotopes and land-use change.
rsofun wraps the P-model and BiomeE vegetation models in R with Fortran cores, covering photosynthesis, water balance and forest demography, plus Bayesian calibration. The 5.1.0 release is the first in the window to widen what the models simulate rather than reorganise them. Before it, the history is renaming, cost-function rewrites and output-format consistency work.
What is smam?
Animal-movement models in R, where new stochastic processes arrive years apart.
smam fits statistical models of animal movement, covering moving-resting processes with and without measurement error, moving-resting-handling, and moving-moving processes, with simulation, point estimation and variance estimation for each. The last three releases are pure upkeep: guarding Rf_error calls after an Rcpp update, a maintainer email change, and a compiler warning fix. The substantive work in this window is 0.7.0, which added estimate and vcov generics across all fit functions, and 0.6.0, which added the moving-moving process.
rsofun vs smam: editorial side-by-side
rsofun
0.0INFRA · APIS
An ecosystem model starts tracking carbon isotopes and land-use change.
◆ Current state
rsofun wraps the P-model and BiomeE vegetation models in R with Fortran cores, covering photosynthesis, water balance and forest demography, plus Bayesian calibration. The 5.1.0 release is the first in the window to widen what the models simulate rather than reorganise them. Before it, the history is renaming, cost-function rewrites and output-format consistency work.
◆ Where it's heading
The direction is from a calibration harness toward a model that can answer different questions: isotope fractionation now comes out of the P-model, BiomeE handles land use and land-use change, and forcing can be recycled when a simulation outruns its data. Version stamps are unreliable here, with a v5.0 tag carrying only a build fix and predating v4.4, so the arc reads better through content than through numbering.
◆ Prediction
The isotope work is explicitly unfinished, with a constant atmospheric signature standing in for daily d13c forcing, so the next likely step is accepting that as model input.
smam
0.0INFRA · APIS
Animal-movement models in R, where new stochastic processes arrive years apart.
◆ Current state
smam fits statistical models of animal movement, covering moving-resting processes with and without measurement error, moving-resting-handling, and moving-moving processes, with simulation, point estimation and variance estimation for each. The last three releases are pure upkeep: guarding Rf_error calls after an Rcpp update, a maintainer email change, and a compiler warning fix. The substantive work in this window is 0.7.0, which added estimate and vcov generics across all fit functions, and 0.6.0, which added the moving-moving process.
◆ Where it's heading
This package grows by adding process models, and it does so rarely. Between the moving-moving process in 2021 and now, the only interface-level change has been the 0.7.0 generics that gave every fit function a common way to retrieve estimates and their covariance, which is consolidation of an accumulated collection rather than expansion of it. The three releases since are entirely reactive to toolchain and CRAN pressure, and they arrive in step with the maintainer's other package coga, which received the same Rcpp guard within twenty minutes on the same day.
◆ Prediction
Expect further releases to be CRAN and Rcpp maintenance unless a new movement process is published, which is what has historically prompted a minor version here. The generics added in 0.7.0 give any future process model a ready-made interface to slot into.
Alternatives to rsofun and smam
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either rsofun or smam.
ggalign
Composable aligned layouts, rebuilt on S7 while ggplot2 4.0 lands underneath.
prioritizr
Conservation planning absorbs the literature's target-setting rules as code.
jSDM
Joint species distribution models in Gibbs-sampled C++, quiet since 2023.
usmap
Ten years in, US mapping splits its data out and finally adds Puerto Rico.
trackeR
Fitness-tracking analysis in slow maintenance, still absorbing upstream breakage.
Recent activity from rsofun and smam
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 5mo agosmamRcpp attributes regenerated to guard Rf_error calls
- 10mo agorsofunCarbon isotope tracking and LULUC support across both models ⚡
- 1y agorsofunLM3-PPA renamed BiomeE; cost function and stress functions rewritten
- 1y agorsofunParallel make fix on the v5.0 tag
- 2y agosmamMaintainer email updated
- 2y agosmamCompiler format-security warning resolved
- 2y agorsofuncnmodel 0.1 research snapshot tag
- 3y agosmamestimate and vcov generics unify all fit functions
- 4y agorsofunFortran crash guards and consistent P-model variable names
- 4y agorsofunPublic release following a code refactor
- 5y agosmamMoving-moving process added with simulation and estimation ⚡
- 5y agosmamVariance estimators adjusted; example dataset added
Frequently asked questions
What is the difference between rsofun and smam?
They serve adjacent needs but don't currently overlap on shipped themes. rsofun and smam are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is rsofun better than smam?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. rsofun and smam are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to rsofun?
Top rsofun alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "rsofun alternatives" section above for the current picks, or visit /alternatives/rsofun for the full list with editorial commentary on each.
What are the best alternatives to smam?
Top smam alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "smam alternatives" section above for the current picks, or visit /alternatives/smam for the full list with editorial commentary on each.