pr2database
The protist reference database keeps widening past the rRNA gene it was built on.
Comparison · Infra & APIs
rsofun vs tf
A side-by-side editorial comparison of rsofun and tf — release velocity, themes, recent moves, and the top alternatives to consider.
rsofun vs tf: at a glance
What is rsofun?
An ecosystem model starts tracking carbon isotopes and land-use change.
rsofun wraps the P-model and BiomeE vegetation models in R with Fortran cores, covering photosynthesis, water balance and forest demography, plus Bayesian calibration. The 5.1.0 release is the first in the window to widen what the models simulate rather than reorganise them. Before it, the history is renaming, cost-function rewrites and output-format consistency work.
What is tf?
tf gave functional data a second dimension: curves whose values are vectors.
tf supplies the vector classes underneath the tidyfun stack — tfd for raw functional observations, tfb for basis-represented ones, both built on vctrs so curves sit in a data frame column and behave like any other vector. Until July that codomain was scalar. The 0.5.0 release adds tfd_mv and tfb_mv, classes for functions whose values are vectors in R^d, and rebuilds the analysis verbs to match.
rsofun vs tf: editorial side-by-side
rsofun
0.0INFRA · APIS
An ecosystem model starts tracking carbon isotopes and land-use change.
◆ Current state
rsofun wraps the P-model and BiomeE vegetation models in R with Fortran cores, covering photosynthesis, water balance and forest demography, plus Bayesian calibration. The 5.1.0 release is the first in the window to widen what the models simulate rather than reorganise them. Before it, the history is renaming, cost-function rewrites and output-format consistency work.
◆ Where it's heading
The direction is from a calibration harness toward a model that can answer different questions: isotope fractionation now comes out of the P-model, BiomeE handles land use and land-use change, and forcing can be recycled when a simulation outruns its data. Version stamps are unreliable here, with a v5.0 tag carrying only a build fix and predating v4.4, so the arc reads better through content than through numbering.
◆ Prediction
The isotope work is explicitly unfinished, with a constant atmospheric signature standing in for daily d13c forcing, so the next likely step is accepting that as model input.
tf
0.0INFRA · APIS
tf gave functional data a second dimension: curves whose values are vectors.
◆ Current state
tf supplies the vector classes underneath the tidyfun stack — tfd for raw functional observations, tfb for basis-represented ones, both built on vctrs so curves sit in a data frame column and behave like any other vector. Until July that codomain was scalar. The 0.5.0 release adds tfd_mv and tfb_mv, classes for functions whose values are vectors in R^d, and rebuilds the analysis verbs to match.
◆ Where it's heading
The package is widening what a functional observation can be, then porting the toolkit onto it. Registration arrived first in 0.4.0 for univariate curves and immediately gained an srvf_mv method for aligning components jointly, and tfb_mfpc() ports principal component analysis to the multivariate case with a single set of scores shared across components. Alongside that runs steady dependency shedding — mvtnorm and pracma both replaced by inlined samplers that reproduce prior draws bit-for-bit, glue dropped for cli in the previous release — and an unusually long tail of NA-handling and edge-case fixes, several caught in pre-release review of the new classes.
◆ Prediction
The new classes ship with FPCA, registration and shape alignment but the release notes describe tidyfun::tf_unnest() as the consumer of one new export, so the visible next step is the rest of the tidyfun stack catching up to vector-valued columns. Expect follow-up patches on the vctrs casting paths, which is where most of this release's late fixes clustered.
Alternatives to rsofun and tf
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either rsofun or tf.
ggalign
Composable aligned layouts, rebuilt on S7 while ggplot2 4.0 lands underneath.
prioritizr
Conservation planning absorbs the literature's target-setting rules as code.
jSDM
Joint species distribution models in Gibbs-sampled C++, quiet since 2023.
usmap
Ten years in, US mapping splits its data out and finally adds Puerto Rico.
trackeR
Fitness-tracking analysis in slow maintenance, still absorbing upstream breakage.
Recent activity from rsofun and tf
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agotfVector-valued functional data becomes a first-class type ⚡
- 5mo agotfCurve registration, five depth measures and sub-domain splitting
- 10mo agorsofunCarbon isotope tracking and LULUC support across both models ⚡
- 1y agorsofunLM3-PPA renamed BiomeE; cost function and stress functions rewritten
- 1y agorsofunParallel make fix on the v5.0 tag
- 2y agotfFix: tf_crosscov normalization
- 2y agorsofuncnmodel 0.1 research snapshot tag
- 4y agorsofunFortran crash guards and consistent P-model variable names
- 4y agorsofunPublic release following a code refactor
Frequently asked questions
What is the difference between rsofun and tf?
They serve adjacent needs but don't currently overlap on shipped themes. rsofun and tf are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is rsofun better than tf?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. rsofun and tf are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to rsofun?
Top rsofun alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "rsofun alternatives" section above for the current picks, or visit /alternatives/rsofun for the full list with editorial commentary on each.
What are the best alternatives to tf?
Top tf alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "tf alternatives" section above for the current picks, or visit /alternatives/tf for the full list with editorial commentary on each.