ggpointless
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Comparison · Infra & APIs
artoo vs PEIMAN2
A side-by-side editorial comparison of artoo and PEIMAN2 — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-packages
artoo vs PEIMAN2: at a glance
What is artoo?
artoo makes any-to-any clinical dataset conversion lossless by construction.
artoo reads and writes SAS XPORT, CDISC Dataset-JSON, NDJSON, Parquet and RDS around one canonical metadata model, so a conversion between any two formats carries labels, CDISC types, lengths, display formats, controlled-terminology references and sort keys intact. It is pure R with no SAS or Java runtime. It reached CRAN at 0.1.1 and has spent 0.1.2 and 0.1.3 on the character-encoding edges.
What is PEIMAN2?
PEIMAN2 cut its annotation database loose from its release cycle without breaking CRAN.
PEIMAN2 does enrichment analysis over post-translational modifications, testing whether a protein list is enriched for particular PTMs against UniProt-derived annotations, with translation functions bridging to mass spectrometry workflows. Its answers are only as current as its bundled database, and until June that database could only be refreshed by releasing a new package version. Version 1.1.0 changes that.
artoo vs PEIMAN2: editorial side-by-side
artoo
2.5INFRA · APIS
artoo makes any-to-any clinical dataset conversion lossless by construction.
◆ Current state
artoo reads and writes SAS XPORT, CDISC Dataset-JSON, NDJSON, Parquet and RDS around one canonical metadata model, so a conversion between any two formats carries labels, CDISC types, lengths, display formats, controlled-terminology references and sort keys intact. It is pure R with no SAS or Java runtime. It reached CRAN at 0.1.1 and has spent 0.1.2 and 0.1.3 on the character-encoding edges.
◆ Where it's heading
Recent work is all about text that does not survive a format change. 0.1.3 adds an invalid_encoding dimension to artoo_checks() that flags bytes which are not valid UTF-8 before a writer aborts on them, accepts the SAS OEM/DOS encoding names, and gives the writers on_invalid = "translit" and "fold" so smart punctuation and accented characters resolve to pinned ASCII instead of failing. The fold tables ship as data specifically so the result is identical on every platform, which is the same determinism argument behind C-locale row sorting in 0.1.0.
◆ Prediction
The new WLATIN1-to-UTF-8 migration article and the width warning on write_xpt() point the next attention at length and truncation semantics rather than at additional formats. These notes name no further target format.
PEIMAN2
0.0INFRA · APIS
PEIMAN2 cut its annotation database loose from its release cycle without breaking CRAN.
◆ Current state
PEIMAN2 does enrichment analysis over post-translational modifications, testing whether a protein list is enriched for particular PTMs against UniProt-derived annotations, with translation functions bridging to mass spectrometry workflows. Its answers are only as current as its bundled database, and until June that database could only be refreshed by releasing a new package version. Version 1.1.0 changes that.
◆ Where it's heading
The package has been moving from a fixed snapshot toward versioned, user-selectable data. Earlier releases updated the bundled database in place — 1.0.0 shipped the March 2025 version and said little else — which meant the annotation vintage was whatever the package version implied. Now update_peiman_database() downloads and caches external database files and UniProt PTM lists, enrichment workflows take a database_version argument, and the mass-spec translators take a ptmlist_version, so an analysis can pin a dated database rather than a package release. The CRAN-safe default is preserved deliberately: loading, examples and checks still use the bundled internal data and need no network.
◆ Prediction
Version pinning is now expressible but the release notes do not describe how a chosen version is recorded in output, so surfacing the active database version in results is the natural companion. The database and the UniProt PTM list are versioned separately, which leaves room for a combined manifest.
Alternatives to artoo and PEIMAN2
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either artoo or PEIMAN2.
mpactr
mpactr spent two spring releases normalizing case in metadata after users kept tripping on it.
surveytidy
surveytidy taught every dplyr verb to operate on a whole collection of surveys at once.
surveycore
surveycore declared its API stable with every survey design type covered.
prospectr
prospectr spent its biggest release in years fixing spectra it had been quietly mangling.
standardlastprofile
A German electricity load-profile package added gas and doubled the market it serves.
See all artoo alternatives → · See all PEIMAN2 alternatives →
Recent activity from artoo and PEIMAN2
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 28d agoartooEncoding checks and translit/fold modes for the writers
- 1mo agoartoonoLD check fix; codec unchanged
- 2mo agoartooInitial CRAN release after resubmission
- 2mo agoPEIMAN2Database updates decouple from package releases ⚡
- 2mo agoartooLossless any-to-any CDISC dataset conversion in pure R ⚡
- 1y agoPEIMAN2Bundled database refreshed to the March 2025 UniProt vintage
- 1y agoPEIMAN2Documentation fix for the second example dataset
- 2y agoPEIMAN2Background lists for SEA and PSEA; tidyverse dependency dropped
Frequently asked questions
What is the difference between artoo and PEIMAN2?
Both compete on the same themes — r-packages — within Infra & APIs. artoo is currently shipping more aggressively (velocity 2.5 vs 0.0), with 0 editorial sparks in the last 30 days against 0. See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is artoo better than PEIMAN2?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. artoo is currently shipping more aggressively (velocity 2.5 vs 0.0), with 0 editorial sparks in the last 30 days against 0. For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to artoo?
Top artoo alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "artoo alternatives" section above for the current picks, or visit /alternatives/artoo for the full list with editorial commentary on each.
What are the best alternatives to PEIMAN2?
Top PEIMAN2 alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "PEIMAN2 alternatives" section above for the current picks, or visit /alternatives/peiman2 for the full list with editorial commentary on each.