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Comparison · Infra & APIs
crandep vs vcfR
A side-by-side editorial comparison of crandep and vcfR — release velocity, themes, recent moves, and the top alternatives to consider.
Shared themes:r-package
crandep vs vcfR: at a glance
What is crandep?
Half CRAN dependency scraper, half extreme-value modelling kit — and the scraper half keeps finding bugs.
crandep does two jobs that rarely share a package: it harvests the CRAN dependency network, and it fits power-law and extreme-value mixture models to the resulting degree distributions. The 2024 releases were all model work — profile posteriors, wrappers, a constrained variant, a TZP-power-law mixture between the two- and three-component models. The 2025 releases are entirely the other half, fixing what the harvester was silently getting wrong.
What is vcfR?
A genomics workhorse whose visible release feed stops dead in mid-2020.
vcfR reads, manipulates and visualises VCF files, the standard format for genomic variant calls, and bridges them into R population-genetics classes such as genind, genlight and DNAbin. The three entries available here all come from the first half of 2020 and stop there, so the feed shows the state of the package six years ago rather than today.
crandep vs vcfR: editorial side-by-side
crandep
0.0INFRA · APIS
Half CRAN dependency scraper, half extreme-value modelling kit — and the scraper half keeps finding bugs.
◆ Current state
crandep does two jobs that rarely share a package: it harvests the CRAN dependency network, and it fits power-law and extreme-value mixture models to the resulting degree distributions. The 2024 releases were all model work — profile posteriors, wrappers, a constrained variant, a TZP-power-law mixture between the two- and three-component models. The 2025 releases are entirely the other half, fixing what the harvester was silently getting wrong.
◆ Where it's heading
The modelling side has settled into a family of mixtures with matching wrapper and profile-posterior functions, and has not gained a new component since mid-2024. Attention has shifted to data quality in the scraper, where two consecutive releases dealt with the same class of problem: rows that should not exist because of trailing commas in CRAN's own metadata, and rows that should exist but did not because orphan packages have no edges. For a package whose science is degree distributions, missing isolated nodes is a modelling error, not a formatting one.
◆ Prediction
Expect further hardening against CRAN metadata quirks in the harvesting functions; the mixture-model side looks feature-complete and is likely to stay quiet unless a new component model is published.
vcfR
0.0INFRA · APIS
A genomics workhorse whose visible release feed stops dead in mid-2020.
◆ Current state
vcfR reads, manipulates and visualises VCF files, the standard format for genomic variant calls, and bridges them into R population-genetics classes such as genind, genlight and DNAbin. The three entries available here all come from the first half of 2020 and stop there, so the feed shows the state of the package six years ago rather than today.
◆ Where it's heading
Within that window the direction is unmistakably consolidation, not growth. 1.9.0 pushed error handling down into the C++ layer that actually reads the VCF so failures surface earlier and shared files stop tripping a readability pre-check, tightened class checks, and added conversion options. The two releases after it exist only to keep pace with R 4.0.0 and dplyr 1.0.0. Any development after June 2020 is not visible in this feed, so the current trajectory cannot be read from it.
◆ Prediction
No prediction can be grounded in these entries — the feed has been silent for six years, which points at a stale or broken source rather than at a package that stopped.
Alternatives to crandep and vcfR
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either crandep or vcfR.
NGINX
nginx returns to feature work with PROXY v2 upstream writes, and quietly adds JSON to core.
ESPHome
ESPHome closes the 2026.8 cycle, but the release body is a bare link to the real notes.
dialr
The R phone-number package stopped only parsing numbers and started asking them where they are.
ggVennDiagram
A Venn diagram package whose public release notes say almost nothing — including about its copyright cleanup.
ordinalsimr
A Shiny app for choosing the right ordinal test reached CRAN in a single 90-minute burst of tags.
See all crandep alternatives → · See all vcfR alternatives →
Recent activity from crandep and vcfR
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1y agocrandepDependency harvest split in two so orphan packages stop disappearing
- 1y agocrandepTrailing commas in CRAN metadata no longer produce empty-name rows
- 2y agocrandepConstrained two-component mixture with continuity at the threshold
- 2y agocrandepArgument names normalised to x_max; MCMC wrapper defaults set
- 2y agocrandepTZP-power-law mixture fills the gap between the 2- and 3-component models
- 2y agocrandepProfile posteriors and chained MCMC wrappers for the mixture models
- 6y agovcfRCompatibility release for R 4.0 and dplyr 1.0
- 6y agovcfRDeprecated dplyr verbs handled in the tidy conversion path
- 6y agovcfRVCF read errors move into C++; allele-return options added
Frequently asked questions
What is the difference between crandep and vcfR?
Both compete on the same themes — r-package — within Infra & APIs. crandep and vcfR are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is crandep better than vcfR?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. crandep and vcfR are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to crandep?
Top crandep alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "crandep alternatives" section above for the current picks, or visit /alternatives/crandep for the full list with editorial commentary on each.
What are the best alternatives to vcfR?
Top vcfR alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "vcfR alternatives" section above for the current picks, or visit /alternatives/vcfr for the full list with editorial commentary on each.