silx
silx settles into maintenance a release after its PySide6 migration
Comparison · Analytics
glyexp vs Holistics
A side-by-side editorial comparison of glyexp and Holistics — release velocity, themes, recent moves, and the top alternatives to consider.
glyexp vs Holistics: at a glance
What is glyexp?
glyexp is retiring its own data container and handing the job to Bioconductor.
glyexp is the container layer under the glycoverse stack, and it just changed what that container is. Versions 0.15.0 and 0.16.0 introduced GlycomicSE and GlycoproteomicSE as SummarizedExperiment subclasses, taught the dplyr-style verbs to operate on them, and then deprecated the legacy experiment() constructor and its accessors. Earlier releases in the window were narrower: as_pseudo_glycome(), a magrittr-free rewrite, and an offline standardize_variable().
What is Holistics?
Holistics is adding governance to the AI layer it spent the summer building.
Holistics ships small, frequent notes - often one or two sentences - covering three strands at once: AI features in Explore and Chat, as-code control over presentation through AML, and workspace hygiene like file history and dark mode. The August entries turn to the AI layer's edges rather than its capabilities, with an AI user attribute for restricting what the assistant can reach. Several entries are barely a line long, so scope frequently has to be read from the headline.
glyexp vs Holistics: editorial side-by-side
glyexp
0.0ANALYTICS
glyexp is retiring its own data container and handing the job to Bioconductor.
◆ Current state
glyexp is the container layer under the glycoverse stack, and it just changed what that container is. Versions 0.15.0 and 0.16.0 introduced GlycomicSE and GlycoproteomicSE as SummarizedExperiment subclasses, taught the dplyr-style verbs to operate on them, and then deprecated the legacy experiment() constructor and its accessors. Earlier releases in the window were narrower: as_pseudo_glycome(), a magrittr-free rewrite, and an offline standardize_variable().
◆ Where it's heading
The package is moving from a bespoke object model to the Bioconductor one, and doing it in explicitly numbered stages tracked in a single issue (glyexp#15). Stage I added the subclasses as experimental; Stage II deprecated the old container and pushed the migration through ten sibling packages within days. The tidy manipulation verbs are being kept as the compatibility bridge, which suggests the dplyr surface is what the maintainer considers glyexp's actual contribution once the container is someone else's.
◆ Prediction
Expect a Stage III release that removes the deprecated experiment() constructor and accessors outright, leaving GlycomicSE and GlycoproteomicSE as the only supported containers.
Holistics
5.0ANALYTICS
Holistics is adding governance to the AI layer it spent the summer building.
◆ Current state
Holistics ships small, frequent notes - often one or two sentences - covering three strands at once: AI features in Explore and Chat, as-code control over presentation through AML, and workspace hygiene like file history and dark mode. The August entries turn to the AI layer's edges rather than its capabilities, with an AI user attribute for restricting what the assistant can reach. Several entries are barely a line long, so scope frequently has to be read from the headline.
◆ Where it's heading
The AI work has moved through a recognizable sequence: capability first with chart suggestions, then observability with AI Chat Insights for admins, and now access control with an AI-specific user attribute. Alongside it, Holistics keeps pulling presentation into AML - custom charts, theme palettes, currency formats - so the things analysts used to click are versioned as code. File history is the join between the two threads, giving every dashboard, model, and dataset its own restorable timeline.
◆ Prediction
With capability, visibility, and access control now in place for the AI layer, the next step is likely audit or policy depth - logging what the assistant answered against which data - rather than new AI surfaces.
Alternatives to glyexp and Holistics
Other Analytics products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either glyexp or Holistics.
Plotly
Plotly is turning its cloud into a metered compute platform with an enterprise on-ramp.
aniread
aniread stops asking you to know which tracker wrote the file
Rho
Rho's release machinery finally produced a stable build — and it shipped no new product.
Usermaven
Usermaven closed the loop: data comes in from anywhere, and now it goes back out.
OpenCTI
OpenCTI spends a release unblocking queues and hardening upserts
See all glyexp alternatives → · See all Holistics alternatives →
Recent activity from glyexp and Holistics
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 2d agoHolisticsAI user attribute restricts AI access to sensitive data
- 16d agoHolisticsCustom currency and unit formats, per field
- 19d agoHolisticsFile history: per-file version timeline and restore
- 22d agoHolisticsCustom charts become AML code with GUI authoring
- 23d agoHolisticsColor palettes can be assigned at the theme level
- 27d agoHolisticsDate-range presets and typed shorthands
- 1mo agoglyexpglyexp deprecates its own container for SummarizedExperiment ⚡
- 1mo agoglyexpExperimental GlycomicSE and GlycoproteomicSE containers land
- 1mo agoglyexpfrom_se() metadata fixes and dataset refresh
- 4mo agoglyexpfilter_obs() and filter_var() drop unused factor levels
- 4mo agoglyexpas_pseudo_glycome() converts glycoproteomics to glycomics
- 5mo agoglyexpstandardize_variable() drops its UniProt network dependency
Frequently asked questions
What is the difference between glyexp and Holistics?
They serve adjacent needs but don't currently overlap on shipped themes. Holistics is currently shipping more aggressively (velocity 5.0 vs 0.0), with 0 editorial sparks in the last 30 days against 0. See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is glyexp better than Holistics?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. Holistics is currently shipping more aggressively (velocity 5.0 vs 0.0), with 0 editorial sparks in the last 30 days against 0. For your specific use case, the alternatives sections above list other Analytics products to evaluate alongside.
What are the best alternatives to glyexp?
Top glyexp alternatives in Analytics are ranked by recent ship velocity. Browse the "glyexp alternatives" section above for the current picks, or visit /alternatives/glyexp for the full list with editorial commentary on each.
What are the best alternatives to Holistics?
Top Holistics alternatives in Analytics are ranked by recent ship velocity. Browse the "Holistics alternatives" section above for the current picks, or visit /alternatives/holistics for the full list with editorial commentary on each.