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Comparison · Infra & APIs

ipeaplot vs PEIMAN2

A side-by-side editorial comparison of ipeaplot and PEIMAN2 — release velocity, themes, recent moves, and the top alternatives to consider.

Shared themes:r-packages

ipeaplot vs PEIMAN2: at a glance

FeatureipeaplotPEIMAN2
SectorInfra & APIsInfra & APIs
Velocity score0.00.0
Sparks · 30d00
Top themesggplot2-themes, data-visualization, brazil, r-packagesproteomics, post-translational-modification, enrichment-analysis, reproducibility
Last editorial update1h ago1h ago
WebsiteVisit →Visit →

What is ipeaplot?

An institutional chart theme whose recent releases are all vignette repair.

ipeaplot supplies Ipea's house style to ggplot2 — theme_ipea(), matching colour and fill scales, and export helpers that write the formats the institute's publications need. The feature line has been quiet since October, when save_ipeaplot() consolidated the format-specific savers. Both July releases exist to get the package building again, not to change it.

Read the full ipeaplot trajectory →

What is PEIMAN2?

PEIMAN2 cut its annotation database loose from its release cycle without breaking CRAN.

PEIMAN2 does enrichment analysis over post-translational modifications, testing whether a protein list is enriched for particular PTMs against UniProt-derived annotations, with translation functions bridging to mass spectrometry workflows. Its answers are only as current as its bundled database, and until June that database could only be refreshed by releasing a new package version. Version 1.1.0 changes that.

Read the full PEIMAN2 trajectory →

ipeaplot vs PEIMAN2: editorial side-by-side

I
ipeaplot
INFRA · APIS
0.0

An institutional chart theme whose recent releases are all vignette repair.

◆ Current state

ipeaplot supplies Ipea's house style to ggplot2 — theme_ipea(), matching colour and fill scales, and export helpers that write the formats the institute's publications need. The feature line has been quiet since October, when save_ipeaplot() consolidated the format-specific savers. Both July releases exist to get the package building again, not to change it.

◆ Where it's heading

The package has been converging on a smaller, more uniform surface: separate save_eps() and save_pdf() helpers gave way to one save_ipeaplot() covering vector and raster formats with sensible defaults, and the Frutiger font dependency was dropped for a default sans-serif. What consumes releases now is downstream breakage — two consecutive patches in ten days, the second traced to geobr, both in vignettes rather than package code.

◆ Prediction

The palette line has grown one colour set at a time and is the most likely place for the next addition, but nothing in these entries commits to it. On current evidence the near term is more compatibility patching against the geobr and ggplot2 packages the vignettes depend on.

P
PEIMAN2
INFRA · APIS
0.0

PEIMAN2 cut its annotation database loose from its release cycle without breaking CRAN.

◆ Current state

PEIMAN2 does enrichment analysis over post-translational modifications, testing whether a protein list is enriched for particular PTMs against UniProt-derived annotations, with translation functions bridging to mass spectrometry workflows. Its answers are only as current as its bundled database, and until June that database could only be refreshed by releasing a new package version. Version 1.1.0 changes that.

◆ Where it's heading

The package has been moving from a fixed snapshot toward versioned, user-selectable data. Earlier releases updated the bundled database in place — 1.0.0 shipped the March 2025 version and said little else — which meant the annotation vintage was whatever the package version implied. Now update_peiman_database() downloads and caches external database files and UniProt PTM lists, enrichment workflows take a database_version argument, and the mass-spec translators take a ptmlist_version, so an analysis can pin a dated database rather than a package release. The CRAN-safe default is preserved deliberately: loading, examples and checks still use the bundled internal data and need no network.

◆ Prediction

Version pinning is now expressible but the release notes do not describe how a chosen version is recorded in output, so surfacing the active database version in results is the natural companion. The database and the UniProt PTM list are versioned separately, which leaves room for a combined manifest.

Alternatives to ipeaplot and PEIMAN2

Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either ipeaplot or PEIMAN2.

See all ipeaplot alternatives → · See all PEIMAN2 alternatives →

Recent activity from ipeaplot and PEIMAN2

Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.

  1. 1mo agoipeaplotVignette fix for geobr breakage
  2. 1mo agoipeaplotPatch for a vignette build error
  3. 2mo agoPEIMAN2Database updates decouple from package releases
  4. 10mo agoipeaplotsave_ipeaplot() unifies vector and raster export
  5. 1y agoPEIMAN2Bundled database refreshed to the March 2025 UniProt vintage
  6. 1y agoPEIMAN2Documentation fix for the second example dataset
  7. 1y agoipeaplotPink palette added; axis break and categorical Y-axis fixes
  8. 1y agoipeaplotFrutiger dropped for a default sans-serif; save_pdf() added
  9. 2y agoipeaplottheme_ipea, colour and fill scales, save_eps on CRAN
  10. 2y agoPEIMAN2Background lists for SEA and PSEA; tidyverse dependency dropped

Frequently asked questions

What is the difference between ipeaplot and PEIMAN2?

Both compete on the same themes — r-packages — within Infra & APIs. ipeaplot and PEIMAN2 are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.

Is ipeaplot better than PEIMAN2?

Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. ipeaplot and PEIMAN2 are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.

What are the best alternatives to ipeaplot?

Top ipeaplot alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "ipeaplot alternatives" section above for the current picks, or visit /alternatives/ipeaplot for the full list with editorial commentary on each.

What are the best alternatives to PEIMAN2?

Top PEIMAN2 alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "PEIMAN2 alternatives" section above for the current picks, or visit /alternatives/peiman2 for the full list with editorial commentary on each.