Retool
Retool is retiring standalone Assist while folding the same capability into the app builder.
Comparison · Infra & APIs
phyloatlas vs tidyaudit
A side-by-side editorial comparison of phyloatlas and tidyaudit — release velocity, themes, recent moves, and the top alternatives to consider.
phyloatlas vs tidyaudit: at a glance
What is phyloatlas?
An atlas of the tree of life that keeps publishing what it got wrong, and stopped shipping the trees it does not own.
This is a curated deposit of species-level phylogenies — 264 trees across 62 partitions, 247 of them time-calibrated — paired with a species-name dictionary of roughly 638,000 standardized labels and per-tree provenance. It is moving through peer review at Methods in Ecology and Evolution, and the release stream is essentially a public erratum log: eight releases in five weeks, each reconciling the deposit against source papers, the manuscript, and its own metadata. The most recent replaced the turtle canonical with a 274-tip ultrametric chronogram after the previous tree failed time-calibration integrity checks.
What is tidyaudit?
Pipeline provenance for tidyverse workflows, recording what changed at each step without keeping the data.
tidyaudit records lightweight metadata snapshots as data flows through a pipeline — row and column counts, NA counts, and structured diffs between any two points — without storing the data itself. Taps are operation-aware, so join, filter, and anti-join steps each report what that operation specifically did, and validation helpers cover join integrity, primary keys, and variable relationships. The trail can now be exported as a self-contained interactive HTML diagram or serialized to JSON or RDS.
phyloatlas vs tidyaudit: editorial side-by-side
phyloatlas
0.0INFRA · APIS
An atlas of the tree of life that keeps publishing what it got wrong, and stopped shipping the trees it does not own.
◆ Current state
This is a curated deposit of species-level phylogenies — 264 trees across 62 partitions, 247 of them time-calibrated — paired with a species-name dictionary of roughly 638,000 standardized labels and per-tree provenance. It is moving through peer review at Methods in Ecology and Evolution, and the release stream is essentially a public erratum log: eight releases in five weeks, each reconciling the deposit against source papers, the manuscript, and its own metadata. The most recent replaced the turtle canonical with a 274-tip ultrametric chronogram after the previous tree failed time-calibration integrity checks.
◆ Where it's heading
The project's defining decision is that it archives the recipe rather than the corpus. Since 1.0.3 the Zenodo deposit holds metadata, provenance, and standardization code while the tree files live at their original sources, and the same principle was applied again when the TimeTree-of-Life was removed at the TimeTree project's request and reduced to a citation. What makes the correction log unusual is its direction: partitions keep getting reclassified from dated to undated as verification confirms the source papers described chronograms they never deposited. The atlas is being built to be honest about archival uncertainty rather than to maximize coverage.
◆ Prediction
The release cadence is driven by the manuscript review cycle, so expect corrections to continue until MEE acceptance and then slow sharply; the open thread most likely to produce the next one is the remaining recoverable archival uncertainty flagged across non-Condamine dated source trees.
tidyaudit
0.0INFRA · APIS
Pipeline provenance for tidyverse workflows, recording what changed at each step without keeping the data.
◆ Current state
tidyaudit records lightweight metadata snapshots as data flows through a pipeline — row and column counts, NA counts, and structured diffs between any two points — without storing the data itself. Taps are operation-aware, so join, filter, and anti-join steps each report what that operation specifically did, and validation helpers cover join integrity, primary keys, and variable relationships. The trail can now be exported as a self-contained interactive HTML diagram or serialized to JSON or RDS.
◆ Where it's heading
The arc is from inspection to artifact. The first release made the trail something you print and read; 0.2.0 made it something you can hand to someone else or feed to another program, with the HTML export deliberately requiring no server and no Shiny. Reporting has been refined in the same direction, with a tabular changes block showing from-and-to values with row, column, and NA deltas. The remaining work in the window is defensive — a factor-handling path rebuilt because R-devel tightened what as.data.frame.table() accepts in row names.
◆ Prediction
With serialization and a standalone export in place, the natural next step is making trails comparable across runs rather than only across steps within one, though nothing in the entries commits to it yet.
Alternatives to phyloatlas and tidyaudit
Other Infra & APIs products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either phyloatlas or tidyaudit.
WPML
WPML made machine translation the default, and its point releases keep chasing WordPress and page builders.
forestploter
A forest plot package that keeps handing users control of one more graphical detail.
ggInterval
Interval-valued data plotting, spending 2026 making its function names and examples survive CRAN.
rgm
A microbiome network model that got itself un-archived by deleting the dependency that killed it.
contagionchannels
Three releases in ten days, every one of them a CRAN reviewer's correction rather than a code change.
See all phyloatlas alternatives → · See all tidyaudit alternatives →
Recent activity from phyloatlas and tidyaudit
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1mo agophyloatlasv1.0.8 — turtle chronogram canonical; MEE integrity pass
- 1mo agophyloatlasv1.0.7 — restore species-name dictionary
- 1mo agophyloatlasv1.0.6 — data-integrity corrections + TimeTree de-redistribution
- 2mo agophyloatlasv1.0.5 — consistency corrections
- 2mo agophyloatlasv1.0.4 — data corrections + canonical succession (Supplementary Table S7)
- 2mo agophyloatlasv1.0.3 — title alignment, LICENSE, three-category framework, sensitivity bounds ⚡
- 3mo agotidyauditFactor auditing fixed against a stricter R-devel
- 4mo agotidyauditTrails export to standalone HTML and machine-readable formats
- 5mo agotidyauditFirst release: pipeline audit trails for tidyverse ⚡
Frequently asked questions
What is the difference between phyloatlas and tidyaudit?
They serve adjacent needs but don't currently overlap on shipped themes. phyloatlas and tidyaudit are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is phyloatlas better than tidyaudit?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. phyloatlas and tidyaudit are shipping at a similar cadence (velocity 0.0 vs 0.0, both within Sparkpulse's "active" band). For your specific use case, the alternatives sections above list other Infra & APIs products to evaluate alongside.
What are the best alternatives to phyloatlas?
Top phyloatlas alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "phyloatlas alternatives" section above for the current picks, or visit /alternatives/phylo-species-atlas for the full list with editorial commentary on each.
What are the best alternatives to tidyaudit?
Top tidyaudit alternatives in Infra & APIs are ranked by recent ship velocity. Browse the "tidyaudit alternatives" section above for the current picks, or visit /alternatives/tidyaudit for the full list with editorial commentary on each.