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Comparison · Collab
SiYuan vs Wiki.js
A side-by-side editorial comparison of SiYuan and Wiki.js — release velocity, themes, recent moves, and the top alternatives to consider.
SiYuan vs Wiki.js: at a glance
What is SiYuan?
SiYuan 3.8.9 reaches RC, adding AI-agent extraction of images embedded in PDFs.
SiYuan moved 3.8.9 from beta.6 to rc.1 on Oct 28. The RC's only new item is AI-agent extraction of images embedded in PDFs; the rest of its long list matches beta.5's cumulative notes: pinned agent sessions, backlink filtering by database fields, block-reference collection through database automation, resizable table rows, mind-map themes and node copy/paste, TIFF previews and macOS proxy detection.
What is Wiki.js?
Wiki.js 3.0 beta ships an MCP server so AI agents can work against the wiki directly.
Wiki.js 3.0 is still a beta not meant for production, but beta.705 adds a built-in MCP server, refined personal access token scopes, page lifecycle rules with page ownership, a feedback board where reviewers manage ideas, and link completion in the markdown editor. Recent betas added live notes, math, access tokens, SCIM and Excalidraw collaboration.
SiYuan vs Wiki.js: editorial side-by-side
SiYuan
5.0COLLAB
SiYuan 3.8.9 reaches RC, adding AI-agent extraction of images embedded in PDFs.
◆ Current state
SiYuan moved 3.8.9 from beta.6 to rc.1 on Oct 28. The RC's only new item is AI-agent extraction of images embedded in PDFs; the rest of its long list matches beta.5's cumulative notes: pinned agent sessions, backlink filtering by database fields, block-reference collection through database automation, resizable table rows, mind-map themes and node copy/paste, TIFF previews and macOS proxy detection.
◆ Where it's heading
The 3.8.x line keeps turning databases and mind maps into structured tools that act on the block graph, and the built-in agent is gaining reach into document content such as PDFs. The release cadence is fast and noisy, with most builds repeating the same cumulative notes.
◆ Prediction
A stable 3.8.9 is likely within days, with little added beyond fixes now that it has reached RC.
Wiki.js
6.3COLLAB
Wiki.js 3.0 beta ships an MCP server so AI agents can work against the wiki directly.
◆ Current state
Wiki.js 3.0 is still a beta not meant for production, but beta.705 adds a built-in MCP server, refined personal access token scopes, page lifecycle rules with page ownership, a feedback board where reviewers manage ideas, and link completion in the markdown editor. Recent betas added live notes, math, access tokens, SCIM and Excalidraw collaboration.
◆ Where it's heading
Each beta adds a piece that larger teams need: SSO and SCIM, governance through ownership and lifecycle rules, and now machine access through MCP and scoped tokens. 3.0 is becoming an AI-accessible knowledge base with enterprise controls rather than a straight successor to 2.x.
◆ Prediction
Expect MCP tools to be tied to the new PAT scopes and page rules, and the beta cadence to keep adding governance features before a release candidate.
Alternatives to SiYuan and Wiki.js
Other Collab products tracked by Sparkpulse, ranked by recent ship velocity. Each card links to a full editorial trajectory and lets you pivot into a head-to-head comparison with either SiYuan or Wiki.js.
KACE
KACE extends its PHP2SHELL fix to the SDA deployment appliance, six days after disclosure.
Mattermost
Mattermost v12 puts user-scoped permissions, private models and audit trails on every agent action.
AFFiNE
AFFiNE's canaries stay on upkeep: a Swift Collections bump follows CVE and migration fixes.
Teable
Teable's Structured Query v2 now reports across multi-hop relations, with a strict mode against SQL.
Readwise
Readwise splits its bundle into Reader-only and Highlights-only plans and renames its first app.
See all SiYuan alternatives → · See all Wiki.js alternatives →
Recent activity from SiYuan and Wiki.js
Latest ship moves from both products, interleaved chronologically. ⚡ = editorial spark.
- 1d agoSiYuanSiYuan 3.8.9 RC1: AI agent extracts images from PDFs
- 1d agoSiYuanSiYuan 3.8.9 beta 6 (same notes as beta 5)
- 1d agoSiYuanSiYuan 3.8.9 beta 5: full notes incl. pinned agent sessions
- 2d agoSiYuanSiYuan 3.8.9 beta 4 improves LaTeX paste and import
- 2d agoSiYuanSiYuan 3.8.9 beta 3 (same notes as beta 1)
- 2d agoSiYuanSiYuan 3.8.9 beta 2 (same notes as beta 1)
- 3d agoWiki.jsWiki.js 3.0 beta adds MCP server and page lifecycle rules ⚡
- 9d agoWiki.jsWiki.js 3 beta adds live notes publishable to pages
- 13d agoWiki.jsWiki.js 3 beta adds math, access tokens; requires Postgres 17
- 16d agoWiki.jsWiki.js 3 beta adds draft recovery, slash menu, multi-replica git sync
- 18d agoWiki.js3.0 beta adds OIDC/SAML claim options and hardens v2 import
- 20d agoWiki.jsWiki.js 3.0 beta adds glossary auto-linking and non-Latin paths
Frequently asked questions
What is the difference between SiYuan and Wiki.js?
They serve adjacent needs but don't currently overlap on shipped themes. Wiki.js is currently shipping more aggressively (velocity 6.3 vs 5.0), with 1 editorial sparks in the last 30 days against 0. See the at-a-glance table above for a side-by-side breakdown of velocity, recent sparks, and editorial themes.
Is SiYuan better than Wiki.js?
Sparkpulse doesn't pick a winner — we score release velocity, not feature parity. Wiki.js is currently shipping more aggressively (velocity 6.3 vs 5.0), with 1 editorial sparks in the last 30 days against 0. For your specific use case, the alternatives sections above list other Collab products to evaluate alongside.
What are the best alternatives to SiYuan?
Top SiYuan alternatives in Collab are ranked by recent ship velocity. Browse the "SiYuan alternatives" section above for the current picks, or visit /alternatives/siyuan for the full list with editorial commentary on each.
What are the best alternatives to Wiki.js?
Top Wiki.js alternatives in Collab are ranked by recent ship velocity. Browse the "Wiki.js alternatives" section above for the current picks, or visit /alternatives/wikijs for the full list with editorial commentary on each.